PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02422.1.p
Common NameEUGRSUZ_D02422
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TCP
Protein Properties Length: 301aa    MW: 32028.6 Da    PI: 7.9562
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02422.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.82.3e-35581973115
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............................. 65 
                       + k++++++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++ti WLl+ a+pai+++tgt                              
  Eucgr.D02422.1.p  58 PSKRSTKDRHTKVEGRGRRVRMPAACAARIFQLTRELGHRSDGETIRWLLERAEPAIIAATGTgtvpaiamsvdgafkiptsaaaakdpepgd 150
                       679************************************************************666666665555555554444444444333 PP

               TCP  66 ...ssssaseceaesssssasnsssg.................kaaksaa.kskksqksaasalnlakesr 115
                          +                     +                  + +s+   ++ +++++   ++++++++
  Eucgr.D02422.1.p 151 ppgK---------------------KkpkrpansdyvdvgehmTSPSSTIlAPSTQNHQQ---HHPHHHHH 197
                       3330.....................03333444444555544322222221222222222...22222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-2962183IPR005333Transcription factor, TCP
PROSITE profilePS5136926.87763117IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
METTRKHQMD EREEDDGATT LELRIDAAAA VSSTLTLKEE PGKEETPQQL RAAAASLPSK  60
RSTKDRHTKV EGRGRRVRMP AACAARIFQL TRELGHRSDG ETIRWLLERA EPAIIAATGT  120
GTVPAIAMSV DGAFKIPTSA AAAKDPEPGD PPGKKKPKRP ANSDYVDVGE HMTSPSSTIL  180
APSTQNHQQH HPHHHHHLFP QAPAASPISS FAAALQQYEA TAATKRAEAQ GGDSASPEMG  240
GANMRSDASG PKPARAASVM APSSVATASA PHVLRDFSLE IRDSREPKES DRSSDDARGR  300
*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00638PBMTransfer from Lj0g3v0004489Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02422.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053872.10.0PREDICTED: transcription factor TCP9
SwissprotO646473e-54TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A059CJ110.0A0A059CJ11_EUCGR; Uncharacterized protein
STRINGXP_010053872.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.21e-46TCP family protein