PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02497.1.p
Common NameEUGRSUZ_D02497
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 373aa    MW: 41364.2 Da    PI: 5.3067
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02497.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059426123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      +kC+ C+ksF +   L  H+r+H
  Eucgr.D02497.1.p  4 HKCKLCSKSFYNGRALGGHMRSH 26
                      79********************9 PP
2zf-C2H213.60.0002250272123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cg++F++   L  H  +H
  Eucgr.D02497.1.p 250 FRCETCGRTFRSYQALGGHRASH 272
                       89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.44E-8326No hitNo description
PfamPF139129.5E-7326IPR007087Zinc finger, C2H2
SMARTSM003550.015426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.803431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.44E-8245272No hitNo description
SMARTSM003550.026250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.302250277IPR007087Zinc finger, C2H2
PfamPF139127.9E-11250274IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
PfamPF139122.1E-9297320IPR007087Zinc finger, C2H2
SMARTSM003550.28298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037298325IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MERHKCKLCS KSFYNGRALG GHMRSHLVNL PLPLKPGEEE EREPPVQLRG AETPRGRSGS  60
SPPSSSSSPE EEEEEGEGDE EAGKLQAQGY GLRENPKKSI RLADPEFAID AGSVVLQDRE  120
SETESSKNLA GRRFKSSATE ATTQRRFSLE EDHRCRKKMR RMPSKAESAS SISDETTEED  180
LALCLMMLSR GKWRREKSHR GRENVDDWVE EEDEDDDDQE DGKEEEDEEE SEESEGLAVK  240
ALRNQNRGNF RCETCGRTFR SYQALGGHRA SHKKSKLGDP AAAENVGENA NPGSSKVHEC  300
PFCFRVFASG QALGGHKRSH AINSTAAADA AAAARAVKKT SHHHHDVKSR ATAWIDLNLP  360
APVDEDEDDQ LSQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RCRKKMR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02497.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053941.10.0PREDICTED: zinc finger protein ZAT9
TrEMBLA0A059CIP00.0A0A059CIP0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010053941.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-44C2H2-like zinc finger protein