PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02499.1.p
Common NameEUGRSUZ_D02499, LOC104442276
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 516aa    MW: 53561.5 Da    PI: 8.1608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02499.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.6e-16328373555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Eucgr.D02499.1.p 328 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASVLDEVIEYLKQLQ 373
                       9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-18321389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.784323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.17E-17328377No hitNo description
Gene3DG3DSA:4.10.280.102.2E-17328382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13328373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-18329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSQCVPDWDF DDSGGGGNHP TPCRRSLRSH SFNPSTPDVP MSNYEVAELT WENGQLAMHS  60
LGLPRAPAKP LPSSTAPSKY AWVDKPRAAA NAGAANAGTG TLECIVNQAT ALPRRKLPFE  120
AAAGDLVPWF DPSRGAAATA TAGTMTMDAL VPCAGAGADD RTTAHFVDSA AGSGGGVGTC  180
VVGCSTRVGS CNGAAAPGPA QEKDALAARK RARVARTAAA ATVAATAAEW SGMDQSASGS  240
ATFGRDSQQM TLDTGEMEIG AGMTSTSLGS PENTSSGKGC TRATAAADDH DSVCHSRPPR  300
EGGDDEDNKK RSGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS  360
VLDEVIEYLK QLQAQVQMVN RMNMQPMMMP MAMQQQLQMS MMGPMGMGLG MVGMGMPGMG  420
MMDMNALGRS NLAGISPVLH PAAAAATAAA FMPMGSWGDG GDRAATATTA PMVMPDPMSP  480
FLASQSQPMT LDAYSRIAAM YAQQMHQPPP SGSKN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERKRRD
2332337RKRRDK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02499.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053944.10.0PREDICTED: transcription factor UNE10
TrEMBLA0A059CK610.0A0A059CK61_EUCGR; Uncharacterized protein
STRINGXP_010053944.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-63bHLH family protein