PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02505.1.p
Common NameEUGRSUZ_D02505, LOC104442282
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 349aa    MW: 38354.9 Da    PI: 8.206
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02505.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.62.4e-40125202178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +CqvegC++ l +akeyhrrhkvCe hskap v+v gleqrfCqqCsrfh++sefD++krsCrrrLa+hnerrrk+++
  Eucgr.D02505.1.p 125 RCQVEGCHVALGDAKEYHRRHKVCESHSKAPRVVVLGLEQRFCQQCSRFHQVSEFDDAKRSCRRRLAGHNERRRKSSH 202
                       6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-34120187IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.3123200IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-38124204IPR004333Transcription factor, SBP-box
PfamPF031101.3E-31126199IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MENGGSYYPY QPTYLSNPQP LNGHFHASHL PWDTAADLTS PAAAAAPRSR SVVGRPHPQP  60
AFRPPLHAGV GGGELGAPLQ RGRADPHLTC LHLGKRRCFE SERAVGDRRC KTHHGGGAAA  120
AAVPRCQVEG CHVALGDAKE YHRRHKVCES HSKAPRVVVL GLEQRFCQQC SRFHQVSEFD  180
DAKRSCRRRL AGHNERRRKS SHDSVPSYSS QGCALSLLSS SRMDTWVSPS ELSSRSSAAL  240
RELIAEHRAT ILARQLILDR DWPSHYAGGD LGEAQNGSAL LFPHEHQELP EPHCWERFQE  300
EPGTHVTLDL MQAPSSAFGL LSMRGKAKAK DEEECSDIWN SFASTHVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31116199184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02505.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053955.10.0PREDICTED: squamosa promoter-binding-like protein 7
SwissprotQ7XT422e-58SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A059CJH60.0A0A059CJH6_EUCGR; Uncharacterized protein
STRINGXP_010053955.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15613914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.11e-35squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]