PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02541.1.p
Common NameEUGRSUZ_D02541
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 529aa    MW: 58088.2 Da    PI: 4.8463
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02541.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix106.32.1e-33248333187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       rW+k ev aLi++r+ +e+r++++  k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  Eucgr.D02541.1.p 248 RWPKVEVIALIKLRSGLESRYQEAGPKGPLWEEISAGMARMGYKRSAKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 333
                       8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.69241305IPR017877Myb-like domain
PfamPF138372.3E-23247334No hitNo description
CDDcd122037.16E-29248312No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSASPMGMIF SSNSSSSSGR SEEDDDDEED EEEGEPSTTG SSRKRKRGPG ETSGSGGGSR  60
RKMMELFEGL MRQVMQKQEE MQKRFFEAIE KREQDRLIRE EAWRRQEMNR LARENEIAAQ  120
ERAASASRDA AIVSFLQKIT GQTIHLPTMP ATMLATVTTS VPPLSQTPLP KTQVRPTHAA  180
PHPQPPMPPP PTYQEQPQQQ RQNIEVVTHP LPASTGIIMA VPEQQVPPRS QELILSGGSG  240
GEPSSSSRWP KVEVIALIKL RSGLESRYQE AGPKGPLWEE ISAGMARMGY KRSAKRCKEK  300
WENINKYFKK VKESNKKRPE DAKTCPYFHE LDALYRKKEL GGGGGGATSG TAATSGSMGF  360
RAEPSPSTAN LEARPVIAQD QPPPPPPPPA AAPAQAGEPE RKDGGDNSGA QERTVEEGNG  420
GSLKKPEDTV KELIGQGQHQ NQHLDSDQQH LRVNSGNYND KKMEEGDSDN IEDQEENELE  480
EDDEENEEDE ELEEERKMAY KIEFQRPNAS APPNGGGNGA PSFLAMVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02541.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF5735267e-42KF573526.1 Lilium hybrid cultivar Sorbonne LS-ZJU02 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054910.20.0PREDICTED: trihelix transcription factor GTL1, partial
TrEMBLA0A059CIU70.0A0A059CIU7_EUCGR; Uncharacterized protein
STRINGXP_010054910.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62262746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.14e-49Trihelix family protein