PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02573.1.p
Common NameEUGRSUZ_D02573, LOC104443283
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BES1
Protein Properties Length: 668aa    MW: 75365.6 Da    PI: 5.8064
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02573.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF8221562.8e-48611982134
            DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspessl 94 
                       g+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr++  p     +  +++ +s  s+ 
  Eucgr.D02573.1.p  61 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEADGTTYRQSPPPS----QLATFSARSMDSPA 149
                       689******************************************************************776555....66677777777777 PP

            DUF822  95 q.sslkssalaspvesy.saspksssfpspssldsislasa.......a 134
                       +  slks+ +++ ++s+ sa+++ ++++sp+slds+ +a++        
  Eucgr.D02573.1.p 150 SaASLKSYGVKTTLDSQpSAVMRMDESLSPASLDSVVIAEKdpksvkyG 198
                       7789*******999988467899**************998754444331 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.4E-4961204IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene3DG3DSA:3.20.20.803.2E-171231657IPR013781Glycoside hydrolase, catalytic domain
SuperFamilySSF514458.31E-156235660IPR017853Glycoside hydrolase superfamily
PfamPF013739.7E-86252623IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57267281IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57288306IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57310331IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57403425IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57476495IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57510526IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57527538IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57545568IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.3E-57581603IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MNSNAGGFSD DLINNPQTDH PPDVLLPHPH LPQPPPPQQQ QQRRPRGFAA TAAAAATAVP  60
GKGKREREKE KERTKLRERH RRAITSRMLA GLRQYGNFPL PARADMNDVL AALAREAGWT  120
VEADGTTYRQ SPPPSQLATF SARSMDSPAS AASLKSYGVK TTLDSQPSAV MRMDESLSPA  180
SLDSVVIAEK DPKSVKYGNA SPINSVIECL DAEQLIHDVS SVDHQNVFTD TEFVPVYVKL  240
DGTINNYCQL VDQEVVRQEL NHIKSLNADG VVVDCWWGIV EGWNPQRYVW SGYRELFHII  300
REFKLKLQVV LAFHEYGGND SGDFSVSLPQ WVLEIGKENE DIFFADREGR RNTECLSWGI  360
DKERVLKGRT AIEVYFDLMR SFRTEFDDFF CEGLITAVEI GLGPNGELKY PSFPERMGWR  420
YPGVGEFQCY DKYLQQNLRK AAKMRGHSFW ARGPDNAGQY NSRPHETGFF CERGDYDSYY  480
GRFFLHWYAQ TLMDHADSVL SLANLAFEEA NIIVKVPAVY WWHKTASHAA ELTAGYYNPT  540
NQDGYSPVFE VLKRHSVTLK FVCLGLHSQE IDESSADPEG LNWQVLNSAW DRGLAVAGEN  600
APSCYDRDGF MRIVEMAKPR NDPDRHHFSF FVYHQPSSLV QSTMGFSELD FVIKCMRGGI  660
LEDLLPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12123362011401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02573.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054915.10.0PREDICTED: beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A059CJR30.0A0A059CJR3_EUCGR; Beta-amylase
STRINGXP_010054915.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]