PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.D02611.1.p

Common Name

EUGRSUZ_D02611, LOC104442369

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 294aa MW: 32064.1 Da PI: 9.4857

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.D02611.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.5	1.3e-32	28	82	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av++LGG++kAtPk++ +lm++kgLtl+h+kSHLQkYRl Eucgr.D02611.1.p 28 KPRLRWTADLHERFVDAVTRLGGPDKATPKSVHRLMGLKGLTLYHLKSHLQKYRL 82 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.511	25	85	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	25	83	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.99E-16	28	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-23	28	83	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-8	30	81	IPR001005	SANT/Myb domain
Pfam	PF14379	1.5E-22	128	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYGGSGSGSG SESGGGGGGG VVMTRDPKPR LRWTADLHER FVDAVTRLGG PDKATPKSVH 60 RLMGLKGLTL YHLKSHLQKY RLGQQMRRQN SDDTTKPSDG FPYVQFSPSR MAGSSSQAGH 120 LQPGGEIPIE ETLKCQIEVQ KRLQEQLEVQ KKLQMRIESQ GKYLQTILEK AQKSLSLDAS 180 GPVNLEATRT QIADFNLAIS NFGDHGRGGG GAVAERNNSS NFINMMMSMK EETYERGGHQ 240 NHGLAFQIYE GERPQAQDIE AKRSEGSSMI HFDLNIKGGH DFLGAKLGSN MMI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-18	28	81	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-18	28	81	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-18	28	81	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-18	28	81	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.D02611.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010054085.1	0.0	PREDICTED: myb family transcription factor PHL11
Swissprot	C0SVS4	3e-74	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A059CJ51	0.0	A0A059CJ51_EUCGR; Uncharacterized protein
STRING	XP_010054085.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	5e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	Eucgr.D02611.1.p
Entrez Gene	104442369

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]