PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.D02651.2.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 604aa    MW: 65879.7 Da    PI: 6.2078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.D02651.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-162468147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      r rWT++E+ ++++a k++G   W +I +++g ++t+ q++s+ qk+
  Eucgr.D02651.2.p 24 RERWTEDEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                      78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-161874IPR009057Homeodomain-like
PROSITE profilePS5129420.5531973IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-82170IPR009057Homeodomain-like
TIGRFAMsTIGR015577.3E-162271IPR006447Myb domain, plants
SMARTSM007172.5E-122371IPR001005SANT/Myb domain
PfamPF002493.4E-132467IPR001005SANT/Myb domain
CDDcd001673.61E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDTYSSGEDL IVKTRKPYTI TKQRERWTED EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEKEAIVKG VPVGQTLDIK IPPPRPKRKP SNPYPRKTGA STPTLSVGAK  120
DGGILSVSPS NCEKLDSETA SFLERASGGE KLANSKENQD DNCSEVFNLP QEAHCSSISS  180
TNRSVVPTPV GIQNSCTFRM FVPSLKEGVQ DNGPRKVSNS ENSDRSHEKS VQCRMDGYDG  240
PPADEMQTAH NFPRHVPVHV LDANHTKCTQ APLQDVSFQD SAFDPTGEVK ARLNLFPNQT  300
PSAAGENQKE APRMDHQSFP AFHPPFTPVH HNEDDYRSFL HLSSTFSSLI VSTLLQNPAA  360
HVAASFAASL WPYPNVENSV VDSAVCTQGT FPCRPSSSPP SMAALAAATV AAATAWWAAH  420
GLLPLCAPLH TGFTCNPTSA TAVHSLNTSQ TPGVEKERRE CTFENPCSQE HLDPEHSEAL  480
QAQNSASKSP LGALSDSEDS GGARLDTRSK AADHEKAAVE TDSQQNQSKG GKPVDRSSCG  540
SNTPSSSEVE TDALEKQEKG NETLKDPDPN QSILEYFNRR CRSTSNVTDS WKEVSEEVRD  600
VDF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00119DAPTransfer from AT1G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.D02651.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010054138.10.0PREDICTED: protein LHY isoform X1
RefseqXP_010054139.10.0PREDICTED: protein LHY isoform X1
TrEMBLA0A059CK430.0A0A059CK43_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010054137.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01060.49e-94MYB_related family protein