PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00047.1.p
Common NameEUGRSUZ_E00047, LOC104443355
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 621aa    MW: 68522.7 Da    PI: 6.3455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13450496455
                       HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Eucgr.E00047.1.p 450 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINELQ 496
                       799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.0E-5459247IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474596.8E-18445509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.047446495IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.53E-15449500No hitNo description
Gene3DG3DSA:4.10.280.101.8E-17450508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10450496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-16452501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVGGGIEMKI ELGAGYGPWN DEEKAMVAAV LGTRAFDYLV SRSVSNENLL MSIGSDENMQ  60
DKLSNLVDHP NSSNFSWNYA IFWQISRSKS GDWLLGWGDG SCREPKDGEE SEATRILNLR  120
LEDEGQQRMR KRVLDKLHTV FGGSDEDNYA LGLDRVTDME MFFLASMYFL FPSGEGGPGK  180
CFASEKHVWL TDALKSSSDY CVRSFLAKSA GIRTIVLVPT DVGVVELGSV RSVPESSELV  240
QTIRLSFSTN SFMSVKPIAA LPMTNEKKDE NAPFSNLALA GKGEAISKIF GKELTAVNSP  300
GHYREKLAVR KMDSRQSWEP HHNGSKLPFS TPRNGTQDTS WAHHAHGVKQ LSPVEFYGSQ  360
TSASKLEERM NSGRNDFGLN RYPTPKQVQM QIDFTGATSR PSVITRPFTA DSEHSDVEAS  420
CKEEQGGAAN EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD  480
KASLLGDAIA YINELQAKLK IMEADRERFG STSRDASDVE VNATAEQSNQ SPDVDIQATA  540
ADEVVVRVSC PLNSHPASRV IQAFQEAQVT VLDSKLSTAN DTVFHTFLIK SQGSEQMTKE  600
KLTAAFSRES NSLEPLSSVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29444506264Transcription factor MYC2
5gnj_B4e-29444506264Transcription factor MYC2
5gnj_E4e-29444506264Transcription factor MYC2
5gnj_F4e-29444506264Transcription factor MYC2
5gnj_G4e-29444506264Transcription factor MYC2
5gnj_I4e-29444506264Transcription factor MYC2
5gnj_M4e-29444506264Transcription factor MYC2
5gnj_N4e-29444506264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431439KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00047.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055004.10.0PREDICTED: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A059C0Q70.0A0A059C0Q7_EUCGR; Uncharacterized protein
STRINGXP_010055004.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]