PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00271.1.p
Common NameEUGRSUZ_E002711, LOC104443540
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 369aa    MW: 37907.4 Da    PI: 8.1014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00271.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.7e-1076100126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt+lC+ f++ GtC+y  +C+FaH+
  Eucgr.E00271.1.p  76 FKTKLCCKFRA-GTCPYVTNCNFAHS 100
                       69*********.*************8 PP
2zf-CCCH18.63.4e-06150175126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       yk + C+ f+    C+yGd+C+F H+
  Eucgr.E00271.1.p 150 YKGRHCKKFYTEEGCPYGDSCTFLHD 175
                       78888********************7 PP
3zf-CCCH41.71.9e-13248273126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +kt++C+ +  tG+C++G++C+FaHg
  Eucgr.E00271.1.p 248 WKTRICNKWELTGYCPFGNKCHFAHG 273
                       8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902296.12E-873106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-1473108IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13175102IPR000571Zinc finger, CCCH-type
SMARTSM003560.00375101IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-776100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7148177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-9148177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098149177IPR000571Zinc finger, CCCH-type
SMARTSM003560.086149176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-17242277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-10244278IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9247274IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225247275IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10248273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MQNPAADQGV WASEDEYRVW NGGLTPSSDA PSSNSSYDGG RQSQTRSGSE PPSKKSRNGS  60
DSAVSSRSKA IGKMFFKTKL CCKFRAGTCP YVTNCNFAHS IEELRRPPPN WQEIVAAHEE  120
EKGVASEPRE EFQIPSLGSS GFSGESQRSY KGRHCKKFYT EEGCPYGDSC TFLHDEQSKN  180
RESVAISLGP GGYSGGGGGG GGGGGSGGGG GGGGGGGGGG GGGGVGGGVG GGGGGGAGAG  240
SNVKPSNWKT RICNKWELTG YCPFGNKCHF AHGAAELHRY GGGLVESEAR DATSAPADPK  300
QGGAPSKTPA DTAVASAVSV PHTDAYHIGV PSQRSAIIIQ RPGQRTHQKW KGPDKISRIY  360
GDWIDDVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193205SGGGGGGGGGGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00271.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730615.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-127C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A059C0M60.0A0A059C0M6_EUCGR; Uncharacterized protein
STRINGXP_010055309.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.12e-69C3H family protein