PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00283.1.p
Common NameEUGRSUZ_E00283
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 174aa    MW: 19006.9 Da    PI: 6.0906
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00283.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-053658123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C + F++   L  H+++H
  Eucgr.E00283.1.p 36 YTCTFCRREFRSAQALGGHMNVH 58
                      9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-63363No hitNo description
Gene3DG3DSA:3.30.160.607.6E-43461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1573663IPR007087Zinc finger, C2H2
SMARTSM003550.00663658IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-53659IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MWNANQTQQD DDSWEVKAFA EDTRNMMGAT WPPRSYTCTF CRREFRSAQA LGGHMNVHRR  60
DRARLHQSQS CPSSTAPLLV IPVNEFVANG GLCFPYPLPG PNGIFNTSSP PSTLLSVSPY  120
PPNETNFPSP SQSFTRKYDT AGSKSPKVDD TSNDSGDSAG DGLDLELRLG HGPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-133158229superman protein
2l1o_A1e-133158229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00283.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058171.11e-128PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A059C0N71e-127A0A059C0N7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010058171.11e-128(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-33C2H2 family protein