PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00364.2.p
Common NameEUGRSUZ_E00364
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 540aa    MW: 59650.9 Da    PI: 7.4095
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00364.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.41.1e-14741135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Eucgr.E00364.2.p  7 CCHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                      99**************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.1E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.38E-10646No hitNo description
CDDcd002024.95E-16655No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF003202.1E-12741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-11741IPR013088Zinc finger, NHR/GATA-type
PfamPF139191.2E-8282375IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MVKQGPCCHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHS RADPENYEDH  60
RVARTKSMSV NKKKEVKVLK RKYDSENTTV RGNSHEYSQS FHKFADDDTS NWSSSGSALS  120
NSESCAQFGS ADASDLTGPA QSVVWDSLVP SRKRTCVNRP KPSAVEKLAR DLHTILHEQQ  180
SSCLSGSSEE DLLLESETPM VSVEIGHGSV LIRHPSSIAR EEESEASSLS VDNKQLKIND  240
VHSHPLTIPV HNNKCVNLPS SKAQTLESPF GQGKEQGQLK RDKSQHEKLR MLGTQSLLVS  300
IELRDVLNFD QFVKYLTYEE QQQLLKYLPQ VDRANFPDSL RSMFDGAAFL ENLSSFQHLL  360
AEGLFDASLS VAKEEDYKTL RRLVLSDSIK CKWVEHFHQK CKGGSVKPSS QGGRETVSSN  420
LIKGNGLHDI QKQKYTDVNA KMKSPRRIIM GGSSKNKEIA ESDGSCFSPR SLFAVPPDGG  480
ALLLDSLHVT DDNSEQDLLL DVPSNSSFPQ AELLRPAMSF VSQQASTSSS SLYPQLVYP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00364.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055425.10.0PREDICTED: GATA transcription factor 26
SwissprotQ8W4H11e-141GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A059C1140.0A0A059C114_EUCGR; Uncharacterized protein
STRINGXP_010055425.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-120GATA transcription factor 26