PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00551.1.p
Common NameEUGRSUZ_E00551
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 270aa    MW: 30174.4 Da    PI: 8.9821
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.37.2e-2441214128
               NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                        ++F+Pt+e l  ++L++k++g +l+    i+e+d+y+ ePw++   + ++e+  y F++ +k+   ++r  r++ sg+Wk++   +++++++
  Eucgr.E00551.1.p   4 LVKFRPTNEHLFAHFLQQKATGAPLPP-GLIEECDLYSQEPWRIF-DT-TSEQTFYVFTTLRKN---KSRVLRTAGSGTWKEQHA-TKITESR 89 
                       589*********************999.89**************6.32.345667888877664...579***********9987.567777* PP

               NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                       gelvg kk++ f  gr +++++ +W+m+e+++
  Eucgr.E00551.1.p  90 GELVGYKKSFKFQGGRGSSATSGRWIMNEFSM 121
                       ******************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100529.8591137IPR003441NAC domain
PfamPF023659.7E-153120IPR003441NAC domain
SuperFamilySSF1019419.68E-295136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MNPLVKFRPT NEHLFAHFLQ QKATGAPLPP GLIEECDLYS QEPWRIFDTT SEQTFYVFTT  60
LRKNKSRVLR TAGSGTWKEQ HATKITESRG ELVGYKKSFK FQGGRGSSAT SGRWIMNEFS  120
MYDERQCKCV LCKIKYYRDE KKSKDKAIVI LDDVLVQFED KNRQAKRARL LHDSSDRTSI  180
ICDFAVALPS STVDGAQPAT SQAISISVPY TEQLQMSMGA APALHLDNDD LAFPGFSGHA  240
IADSLAPMTM ATMQLRRCKE AVMNGWKGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-17112115140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00551.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058227.10.0PREDICTED: NAC domain-containing protein 71
TrEMBLA0A059C1570.0A0A059C157_EUCGR; Uncharacterized protein
STRINGXP_010058227.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13343727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-20NAC-like, activated by AP3/PI