PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E00555.1.p
Common NameEUGRSUZ_E00555
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 317aa    MW: 33858 Da    PI: 9.6034
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E00555.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95e-36231142102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+ +++lisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F+kg+k ll
  Eucgr.E00555.1.p  23 FLTKTYQLVDDPGVDDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFANDCFRKGEKALL 106
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Eucgr.E00555.1.p 107 RDIQRRKI 114
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-5819112IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.78E-3520112IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.7E-3820112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.7E-3223112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-212346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.3E-217486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MPGEQTGDSP VAGDSQRSLP TPFLTKTYQL VDDPGVDDLI SWNEDGTTFI VWRPAEFARD  60
LLPKYFKHNN FSSFVRQLNT YGFRKVVPDR WEFANDCFRK GEKALLRDIQ RRKISPTAAA  120
AGAAAVTVAA VGVAGLTVSP ANSGDEQVIS SSSPPVALAT AAVAAASPSV VHRSPSCTTA  180
PELLEENERL KKENMQMSQE LSQLRGLCNN ILSLMANYVS RQSDSSSAAP EGQALELMPA  240
RQAEAAEDCA GPPSAAALER TTTRRPRRSL RGCSGSPSGG NGRGSRRTAA TAETKRCGRR  300
IGRRRCHPTS VSPGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-272311229129Heat shock factor protein 1
5d5v_B8e-272311229129Heat shock factor protein 1
5d5v_D8e-272311229129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E00555.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055608.20.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D35e-96HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A059C1N50.0A0A059C1N5_EUCGR; Uncharacterized protein
STRINGXP_010055608.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-82HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]