PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01039.1.p
Common NameEUGRSUZ_E01039
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 491aa    MW: 54886.6 Da    PI: 8.0667
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01039.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.3e-08327370232
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C.............. CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPk.as............k 32 
                       r +h e+Er+RR++++++f  Lr+++Pk +              
  Eucgr.E01039.1.p 327 RLNHVEAERQRREKLKQRFYALRSVVPKeLRsrinelegevkfL 370
                       889*************************5525555555555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.0E-3672236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.305325386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.94E-8326362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.06E-6327353No hitNo description
Gene3DG3DSA:4.10.280.102.6E-7327356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5327358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00474423490No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MELVVSILDP FIFFCSKGDF HNNWTEIFLL GIKSGELFVR CPRIMRGPVA CYHYQQGNSA  60
RRTCIVYAHI RPDDWVYSIF WRPTRDDRGC LVLTWGDGQF RGMKGLATHN SNNQRVSKEL  120
GTPEGADFRS SSNMNTKLVQ NEVCDLERYF IVSVTRSYSS KESILGRALC SGTYIWLCGE  180
DELGSYECER VREASMTGIK SIVCISTPHD TGVLELGSTK RLQEDWSLVH SAKSLFNSHF  240
LSTGIIPHVH GEHQSNGVLK EECSTLDGAG ASRCDTCPSD TFGPWGFKSD IKRAGASHNI  300
TSPCKRAAIT KMETDDAEPA QSPFPSRLNH VEAERQRREK LKQRFYALRS VVPKELRSRI  360
NELEGEVKFL PQKPSLNKVA SPLGNETEKT LQVSKIGWSP SLNVAMGLSK MEVEVKVVGD  420
EAVVRVRSPN RDHPAARLMD ALKELELEVH HASLSSVKGT MLQDVVIRTP IGWASEERLR  480
DAILARLCKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-197323722193Transcription factor MYC3
4rqw_B7e-197323722193Transcription factor MYC3
4rs9_A7e-197323722193Transcription factor MYC3
4yz6_A7e-197323722193Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01039.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056012.20.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C3130.0A0A059C313_EUCGR; Uncharacterized protein
STRINGXP_010056012.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.11e-33NACL-inducible gene 1