PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01042.1.p
Common NameEUGRSUZ_E01042
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 437aa    MW: 49165.1 Da    PI: 7.9595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01042.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.51.3e-14253298454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RRd++N++f  Lr+++P+       +++Ka+ L  Av+YIk+L
  Eucgr.E01042.1.p 253 SHVEAERQRRDKMNQRFYALRSVVPNV-----SRMDKASLLADAVDYIKEL 298
                       799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-3625194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.949249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-18252313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-12253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17253309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.33E-13254299No hitNo description
SMARTSM003533.7E-16255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MEELASCASS SLLFPFHHKA SPTLQQLVHL ILQTRTEEWI YFIFWRPSRD KHGCLVLTWA  60
DGHFQGTTRD PFTSKHTTKR VLEETQCLND KFAHSSDIGD PEWYYIFSVA RSYSSEHGLL  120
GKAFRSGGHV WLNGEDRHEL EMYECDERVK EARMYGIKSI ACISIPNGSG VLELGSSEII  180
KEDWSLVHLT KCLFPSQNQS NEESALVDAS KRPFSKPVGT AYHNISKKSY RKKIVDDDDK  240
ESSLSPSLSG PLSHVEAERQ RRDKMNQRFY ALRSVVPNVS RMDKASLLAD AVDYIKELRS  300
RIDALESKLF KYERSSPKRL KSDRAVADVS ETTSLLSNNS STMASTTLAV PRLSEMAVEV  360
KVLGPEAVIL VRSPNVGHPC ARLMDVLEEL GLAVRHASMS CVKGMMRQDV VIRTPVDCLV  420
SDHSMRDAIR NKLCKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-21231948192Transcription factor MYC3
4rqw_B3e-21231948192Transcription factor MYC3
4rs9_A3e-21231948192Transcription factor MYC3
4yz6_A3e-21231948192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01042.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058362.20.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2860.0A0A059C286_EUCGR; Uncharacterized protein
STRINGXP_010058362.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.13e-52bHLH family protein