PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01043.1.p
Common NameEUGRSUZ_E01043
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 473aa    MW: 52468.9 Da    PI: 7.7607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13291338254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       r +h e+Er+RR++++++f  Lr+++Pk      +K++Ka+ L  Av YIk+L
  Eucgr.E01043.1.p 291 RLNHVEAERQRREKLKQGFYALRSVVPKV-----TKMDKASLLSDAVSYIKEL 338
                       789*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-3724200IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.07E-18289357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.18289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16291349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-14291339No hitNo description
PfamPF000103.2E-11291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-16295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00131414472No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MAEITSSASS SSLVPLPKET SLNLQQYFHF LLQIRPDDWV YSIFWQPSRD DRGCPVLIWG  60
DGQFRGMKDL TPKNSTNQRV FKEVGTLGSA GFNASSNMDT KLVQNEVSDL ERYYIVSATR  120
SYSFEESILG WALCSGTHIW LCGEDELGIY ECERVREART TGIKSIVCIS TPCDTGVLEL  180
GSTKRLHEDW SLVRLAKSLF TSHFLSTGIT PHVHEEHQSN GVPKEACSAL DGTGTSRSDT  240
CPSETYGLLG SKRDLKRVGV SQNITSSNKS VTIAKMERDE TEIARLPSPL RLNHVEAERQ  300
RREKLKQGFY ALRSVVPKVT KMDKASLLSD AVSYIKELRS RIDELEGELK FPPPKIGLSK  360
VAGRFGDKTE PISPVSKIGS SPWLNVVKGL SKMEVGVKVV GDEAVVWVRS PNWDHPAARL  420
MGALKELQLE VHHASMSSVK DMMLQDVVIR TPIGWASEES LRDAILARLC KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A9e-19172012193Transcription factor MYC3
4rqw_B9e-19172012193Transcription factor MYC3
4rs9_A9e-19172012193Transcription factor MYC3
4yz6_A9e-19172012193Transcription factor MYC3
5gnj_A1e-19292348763Transcription factor MYC2
5gnj_B1e-19292348763Transcription factor MYC2
5gnj_E1e-19292348763Transcription factor MYC2
5gnj_F1e-19292348763Transcription factor MYC2
5gnj_G1e-19292348763Transcription factor MYC2
5gnj_I1e-19292348763Transcription factor MYC2
5gnj_M1e-19292348763Transcription factor MYC2
5gnj_N1e-19292348763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01043.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058363.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2V80.0A0A059C2V8_EUCGR; Uncharacterized protein
STRINGXP_010058363.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-50bHLH family protein