PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01046.1.p
Common NameEUGRSUZ_E01046
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 355aa    MW: 39962.3 Da    PI: 6.5152
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01046.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11207250755
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        +Er+RR+++N+ f  Lr ++P+ +      ++ Ka+ L  A++YIk+Lq
  Eucgr.E01046.1.p 207 VAERQRRNKMNQQFYALRPVVPTiS------RMHKASLLADAMDYIKELQ 250
                       58*********************66......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-3325178IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088814.57200249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10206255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-9207250No hitNo description
Gene3DG3DSA:4.10.280.106.2E-16207260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14207259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-9208250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEELTSCASS SSIVPLSLVH LILRARPEDW VYSIFWQPSR DDHGRLVLTW GYGHFRGTTR  60
EPFASTPTTN RVLKEAQCPD GQFAHSSDIN IDDPEWYDIF SVMRLYSSED GILGREFRSG  120
GHIWLSGEDH HELEMRECDE RVKEARMHGI QSIVCISIPD GSGVLELGSS EIIQEDWSSS  180
GRKKTVDEDD KESSLSPLLS GPSRNGVAER QRRNKMNQQF YALRPVVPTI SRMHKASLLA  240
DAMDYIKELQ SRIAALESKL VKSELSSPKR LKSNRTVASF SDVSKITSLS SKNSSTTLAV  300
PGWREMVVDV KMVRQEAVIR VWSPNLDHPC ARLMDMLKEL EFKVQDANMS CMKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-141917513180Transcription factor MYC3
4rqw_B5e-141917513180Transcription factor MYC3
4rru_A6e-141917552219Transcription factor MYC3
4rs9_A5e-141917513180Transcription factor MYC3
4ywc_A6e-141917552219Transcription factor MYC3
4ywc_B6e-141917552219Transcription factor MYC3
4yz6_A5e-141917513180Transcription factor MYC3
5gnj_A3e-142082691275Transcription factor MYC2
5gnj_B3e-142082691275Transcription factor MYC2
5gnj_E3e-142082691275Transcription factor MYC2
5gnj_F3e-142082691275Transcription factor MYC2
5gnj_G3e-142082691275Transcription factor MYC2
5gnj_I3e-142082691275Transcription factor MYC2
5gnj_M3e-142082691275Transcription factor MYC2
5gnj_N3e-142082691275Transcription factor MYC2
5t0f_A5e-141917513180Transcription factor MYC3
5t0q_A5e-141917513180Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203212RNGVAERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01046.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058368.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2I20.0A0A059C2I2_EUCGR; Uncharacterized protein
STRINGXP_010058368.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.17e-37bHLH family protein