PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01047.1.p
Common NameEUGRSUZ_E01047, LOC104446168
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 448aa    MW: 50412.1 Da    PI: 7.1639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01047.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13266311555
                       HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       + e+Er+RR+++N+ f  Lr+++P+ +      +++Ka+ L  Av+YIk+Lq
  Eucgr.E01047.1.p 266 NVEAERQRRNKMNQQFYALRSVVPNiS------RMDKASLLADAVDYIKELQ 311
                       4799*********************66......9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.3E-3725194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.78261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.73E-12264311No hitNo description
SuperFamilySSF474593.53E-16265322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11266311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-14267316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-16268320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MEELTSCASS SSVVPLHHET SPPLQQLVHL ILQARPEDWV YSIFWQPSRD DHGRLVLTWG  60
YGHFRGTTRE PFASKPTTNR VLEEAQCPDG QFAHSSDISD PEWYYIFSVM RSYSSEDGIL  120
GRAFRSGGHI WLSGENHHEL EMCECDERVK EARMHGIQSI VCISIADGSG VLELGSSEII  180
QEDWSLVLLA KTLFPAHFSS PLINSRVENP SDDAKEEPAL VGASKGPYAK PVQRHNISEK  240
SGRKKTVDED DKESSSSLRL SGPRRNVEAE RQRRNKMNQQ FYALRSVVPN ISRMDKASLL  300
ADAVDYIKEL QSRFATLESK LVKSEPSSPK RLKSNKTVSY FNDMSKITSL SSKNSSTALA  360
VPGRREMAVD VKMVNQEAVI RVWSPNLDHP CARLMDMLKE LEFKVQDANM SCMKGMMLQE  420
VVIRTPVDRW VSDKSIRDAI RSKLGKE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-18231948192Transcription factor MYC3
4rqw_B8e-18231948192Transcription factor MYC3
4rs9_A8e-18231948192Transcription factor MYC3
4yz6_A8e-18231948192Transcription factor MYC3
5gnj_A1e-18263319662Transcription factor MYC2
5gnj_B1e-18263319662Transcription factor MYC2
5gnj_E1e-18263319662Transcription factor MYC2
5gnj_F1e-18263319662Transcription factor MYC2
5gnj_G1e-18263319662Transcription factor MYC2
5gnj_I1e-18263319662Transcription factor MYC2
5gnj_M1e-18263319662Transcription factor MYC2
5gnj_N1e-18263319662Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264273RNVEAERQRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01047.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058368.10.0PREDICTED: transcription factor MYC2
TrEMBLA0A059C2920.0A0A059C292_EUCGR; Uncharacterized protein
STRINGXP_010058368.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30392163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-48bHLH family protein