PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01093.1.p
Common NameEUGRSUZ_E01093, LOC104444140
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 337aa    MW: 37267.8 Da    PI: 8.2166
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.81.6e-3133137199
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 
                       f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+ 
  Eucgr.E01093.1.p  33 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTSDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGEs 125
                       89**************************99555568889************************************************775777 PP

                       SEE..EEEEE-S CS
                B3  88 sefelvvkvfrk 99 
                        + +l++ ++r+
  Eucgr.E01093.1.p 126 GKDRLYIDWRRR 137
                       888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-4227145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.89E-3030135IPR015300DNA-binding pseudobarrel domain
CDDcd100173.65E-2631120No hitNo description
SMARTSM010193.5E-2333138IPR003340B3 DNA binding domain
PfamPF023624.3E-2933137IPR003340B3 DNA binding domain
PROSITE profilePS5086314.67733138IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MIREFMDLSP RNDGYITQES YTPCAEIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP  60
LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DAGDIVSFQR  120
GAGESGKDRL YIDWRRRPNP PEHTSVFPNL PLPHHQLSFH RSVPWGLSSL VGSAVTSSTT  180
FLGNPYQSYG STSNHPYGHG DIINSSNYGG SSVFLLRSSV APRQLGIMEN MEVQGGGGGG  240
GGLLGARRGV EPVVFDSVPV VHGNKAAAKK FRLFGVNMEC PDSESSEPST SSLQPPQISA  300
TTSQYPSHEL RVYDGWPLLN VPSKDKASSM SLDLEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A6e-65281383114B3 domain-containing transcription factor NGA1
5os9_B6e-65281383114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01093.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056052.10.0PREDICTED: B3 domain-containing protein Os03g0120900
SwissprotQ6EU302e-71Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A059C2E30.0A0A059C2E3_EUCGR; Uncharacterized protein
STRINGXP_010056052.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.19e-68B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]