PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01205.1.p

Common Name

EUGRSUZ_E01205

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 294aa MW: 34729.9 Da PI: 7.6042

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01205.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.8	3.8e-25	33	114	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+++ i++r e+e+++ ++k++k+lWe vs +m+erg++r+p+qCk+kw+nl +ryk ++++ + s+++cp+f++l+ Eucgr.E01205.1.p 33 QWSQEETREFIRIRAELERDFTAAKRNKNLWEIVSGRMKERGYRRTPEQCKCKWKNLLNRYKGKETSDPD----SERKCPFFEELH 114 7************************************************************9999998....4678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.24E-5	30	93	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-5	30	92	IPR001005	SANT/Myb domain
Pfam	PF13837	6.7E-24	32	116	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-5	33	92	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.397	34	90	IPR017877	Myb-like domain
CDD	cd12203	4.80E-23	34	97	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MASSLLIPAE AAGAAAPQQQ QPRPPQLQQH QPQWSQEETR EFIRIRAELE RDFTAAKRNK 60 NLWEIVSGRM KERGYRRTPE QCKCKWKNLL NRYKGKETSD PDSERKCPFF EELHALFIER 120 AKNMQRLHLE SEGTSVQAKK KLKRYGGNQS SDELLEADDE DEDDSDEERP SKVGSRKRKA 180 KEVTINKHMG GTSGVSGRSG GADTLEMLRE FFNQQQEMEM QWRDMMERRA RERLLFEQEW 240 RQSMEKLERE RLMVEQAWRE QEEQRRSREE HRAERRDALL TTLLNKLLHE SDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	1e-12	34	112	7	86	DNA binding protein GT-1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01205.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056151.1	0.0	PREDICTED: trihelix transcription factor GT-3b
TrEMBL	A0A059C3B6	0.0	A0A059C3B6_EUCGR; Uncharacterized protein
STRING	XP_010056151.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17512	9	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	9e-26	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E01205.1.p