PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01260.1.p
Common NameEUGRSUZ_E01260, LOC104444258
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family BBR-BPC
Protein Properties Length: 235aa    MW: 25289.8 Da    PI: 10.4958
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01260.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind247.11.2e-7562234131301
         GAGA_bind 131 klealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv.kkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrq 221
                        ++++p +++ + +k +k kk+++++k+p + ++k+ k+k++ +k+++ k ++++ +++k+ekk+++++++  ++D s++P P CsCtG+ r+
  Eucgr.E01260.1.p  62 ASTTEPAKSNSPGTKSAKPKKRKSSSKEPDQITSKALKQKQPRKKSSSgKGKGQSfPEAKREKKDLNMNIDLTNIDFSGVPSPYCSCTGIARV 154
                       3445566777777777888888888888888888866665555544440445555789*********************************** PP

         GAGA_bind 222 CYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       CYkWG+GGWqS+CCt+++S yPLP+s+ r+g R+agrKmS+ga+ klL +La+eGydl +pvDLkdhWA+HGtnkfvti+
  Eucgr.E01260.1.p 155 CYKWGAGGWQSSCCTISVSEYPLPMSSSRPGVRLAGRKMSNGAYVKLLVRLASEGYDLTHPVDLKDHWARHGTNKFVTIK 234
                       *******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012264.5E-771234IPR010409GAGA-binding transcriptional activator
PfamPF062177.1E-6866234IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGTYSNRGHI MPDANGGPSL SHIAWFYGSG FFPTPKVSSG PSSQTQLNPE DGLPVPPIRS  60
VASTTEPAKS NSPGTKSAKP KKRKSSSKEP DQITSKALKQ KQPRKKSSSG KGKGQSFPEA  120
KREKKDLNMN IDLTNIDFSG VPSPYCSCTG IARVCYKWGA GGWQSSCCTI SVSEYPLPMS  180
SSRPGVRLAG RKMSNGAYVK LLVRLASEGY DLTHPVDLKD HWARHGTNKF VTIK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01260.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056207.11e-173PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822862e-75BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A059C3N51e-171A0A059C3N5_EUCGR; Uncharacterized protein
STRINGXP_010056207.11e-172(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.45e-72basic pentacysteine 7