PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01415.1.p
Common NameEUGRSUZ_E01415, LOC104444343
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 238aa    MW: 25414.6 Da    PI: 8.379
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01415.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601292.1e-40311311100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkC+++Cv+apyf a+q p++fa+vh++FGasn +kll+++p ++r da+ +l+yeA arardPvyG+vg+i++lqqq+ +l+a
  Eucgr.E01415.1.p  31 PCGACKFLRRKCVRGCVFAPYFDADQgPAHFAAVHRVFGASNASKLLARVPAHRRLDAVVTLCYEALARARDPVYGCVGHIFALQQQVVNLQA 123
                       7************************999***************************************************************** PP

            DUF260  93 elallkee 100
                       ela+++++
  Eucgr.E01415.1.p 124 ELAYVQAR 131
                       ****9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.29130132IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-3931129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MSNKNDNNTA SNSDPNGSSS SSTASGGGGG PCGACKFLRR KCVRGCVFAP YFDADQGPAH  60
FAAVHRVFGA SNASKLLARV PAHRRLDAVV TLCYEALARA RDPVYGCVGH IFALQQQVVN  120
LQAELAYVQA RLASLQHFPL QPLPPQSPPQ SELQSSSDTA LLSEVVPNPT LPNMYFNSYQ  180
LQNGALAGLP NFRMNLAEER EIEDAQLHSL ARVFISSSRH LPPPGVRFDG SSPGKNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-37271257104LOB family transfactor Ramosa2.1
5ly0_B1e-37271257104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01415.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056298.11e-173PREDICTED: LOB domain-containing protein 19
SwissprotO813221e-63LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A059C4181e-172A0A059C418_EUCGR; Uncharacterized protein
STRINGXP_010056298.11e-173(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.15e-55LOB domain-containing protein 19