PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01510.2.p
Common NameEUGRSUZ_E01510
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 665aa    MW: 72614.7 Da    PI: 6.7426
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01510.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS216.51.4e-663876302255
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        e+L++++e +++g+  laq +Larl+++ sp g+p++R+a+y++eAL+  l+   +++    +p + s+ + + ++ a+k fse+sP+l+f+
  Eucgr.E01510.2.p 387 AEQLFKAVELIETGNSVLAQGILARLNHQLSPIGKPFHRAAFYVKEALQLLLHA--NSTN---HPPAFSPFSLIYKIGAFKSFSEISPVLQFA 474
                       579**************************************************9..4444...555555556********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++t+Nqa lea+eg ervHii fdi++G+QW++L+q+La R++g+psl+iT+++sp+++++ el  t+e+L++fA+e++v +ef+v+  ++l+
  Eucgr.E01510.2.p 475 NFTCNQAFLEALEGFERVHIISFDIGYGGQWASLMQELALRNGGAPSLKITAFASPTTHDEVELTLTQENLKHFANEINVALEFEVINIEALS 567
                       **************************************************************************************9777776 PP

              GRAS 188 dleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                       +  ++ L  +v  gEa+aVnl +  ++ +      +s  +  L++vk+lsPk+v   ++ +d+++ +F +
  Eucgr.E01510.2.p 568 ST-PWPLplNVPDGEAIAVNLPIGSFSAH------PSFLPLALRFVKQLSPKIVMSLDRSCDRTDVPFPQ 630
                       65.6766226666**********888887......4555679***********************99976 PP
2GRAS29.96.8e-10632663343374
              GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       +++++g++ve++++slvl+W++++Lvs+SaWr
  Eucgr.E01510.2.p 632 RTAVRGFHVEKRQHSLVLCWQRKELVSASAWR 663
                       56699**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.004360664IPR005202Transcription factor GRAS
PfamPF035144.8E-64387630IPR005202Transcription factor GRAS
PfamPF035142.4E-7632663IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MKATPLPFEE LQRKGVVLDF SASSDSSPQH HHHHHHHRQH HHRHHSLQQQ EQQLQQQKWS  60
SGETPRSKLG NFYVGSEKSS FLEIRRSPSP QPSSTLSSSL NSGGGGGGAS TDTTGCAAAA  120
GAAASGNNTP QGALAKCGMG VEDWEGVLPE NSQEQSILRM IMGDIEDPSM GLSKLLQGTG  180
GSQELEFSAG FGVLDPGFGF EPVTSTNLNI ETSLHDSGSD FALGAQNLHG NNVRAPSVSN  240
PIPFFNSAAN NATVPALPPG VFQQHHNESL DEKPMIFNPQ AIINHNQAQF PSNPSFFLPP  300
GHAQMQDHHL LLPPPPKRLN PGSIEPNYSG PGTGLLDSGQ DLFARRQQHQ QLQLHPQQFQ  360
QRPVAAVMKQ KMVNEDIVTQ QLQQAIAEQL FKAVELIETG NSVLAQGILA RLNHQLSPIG  420
KPFHRAAFYV KEALQLLLHA NSTNHPPAFS PFSLIYKIGA FKSFSEISPV LQFANFTCNQ  480
AFLEALEGFE RVHIISFDIG YGGQWASLMQ ELALRNGGAP SLKITAFASP TTHDEVELTL  540
TQENLKHFAN EINVALEFEV INIEALSSTP WPLPLNVPDG EAIAVNLPIG SFSAHPSFLP  600
LALRFVKQLS PKIVMSLDRS CDRTDVPFPQ QRTAVRGFHV EKRQHSLVLC WQRKELVSAS  660
AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1640461421237GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01510.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056373.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A059C5610.0A0A059C561_EUCGR; Uncharacterized protein
STRINGXP_010056373.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-92GRAS family protein