PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01554.1.p
Common NameEUGRSUZ_E01554, LOC104446340
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 183aa    MW: 20285.5 Da    PI: 4.787
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01554.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.72.9e-13117161147
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaai 47 
                       + y+GVr+ + +g+++AeIrdp++ng  +r +lg++ t  eeAa a++
  Eucgr.E01554.1.p 117 CVYRGVRRWP-SGKYAAEIRDPKKNG--ARRWLGTYKTpQEEAALAYD 161
                       68****9999.7**********9998..**********7789999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.3E-8117162IPR001471AP2/ERF domain
SMARTSM003805.4E-13118182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-18118167IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-13118169IPR016177DNA-binding domain
PROSITE profilePS5103213.893118179IPR001471AP2/ERF domain
CDDcd000181.13E-17119162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MCTASSTISE SDVALLECIR QHLLNDDDFE TLAKIAENVQ FHLPVSSSNT FPSLETTMSF  60
EANDGDVDIH HDPLKDAVGF ESASLLNQQP VVDRGHVEAN EAMPAVVHEY DARPGGCVYR  120
GVRRWPSGKY AAEIRDPKKN GARRWLGTYK TPQEEAALAY DRPVRDAWDQ GQAKFPSLDR  180
LQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-14116162348ATERF1
3gcc_A7e-14116162348ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01554.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058504.11e-136PREDICTED: pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A059C4E31e-134A0A059C4E3_EUCGR; Uncharacterized protein
STRINGXP_010058504.11e-135(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.16e-19ethylene-responsive element binding factor 13