PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01600.1.p
Common NameEUGRSUZ_E01600, LOC104444449
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family SBP
Protein Properties Length: 368aa    MW: 38759.7 Da    PI: 8.8649
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.23.2e-40209286178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cq+egC+adl++ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrfh l efD++krsCr+rLa+hn+rrrk+++
  Eucgr.E01600.1.p 209 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAAAVIAGGLTQRFCQQCSRFHLLAEFDNGKRSCRKRLADHNRRRRKSHQ 286
                       6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-34203271IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.24207284IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.15E-37208287IPR004333Transcription factor, SBP-box
PfamPF031101.2E-30210283IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MLEYEWGLGA NPSQILISAD DPTHDPTQTH HHPHHHHPML DHYAVSPHQS FPSSSAAAAA  60
THILSSPNAF SPFAPPHHQQ PPPIAAAHIH NAHHPLFDPR VFGGASYPPP ANPFALDCFG  120
GGGGGGGGGG NGGGFLMVPK SEDATGARPS PAAELAAARI GLNLGGRTYF ASSVAAEDDF  180
VSRLYRRPSA GRAGGEGGGV GSAAANAPRC QAEGCNADLT HAKHYHRRHK VCEFHSKAAA  240
VIAGGLTQRF CQQCSRFHLL AEFDNGKRSC RKRLADHNRR RRKSHQQPGR DNLAKTQQEG  300
CRNSSGDNPS RSPPDSGTQS ASSVTVALSP PRMSLDCFRQ SHHRGYQPPS SSSSASSPSC  360
SLFFSSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-30201283184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056422.10.0PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLA0A059C4M70.0A0A059C4M7_EUCGR; Uncharacterized protein
STRINGXP_010056422.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70102743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-63squamosa promoter binding protein-like 8