PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01734.1.p

Common Name

EUGRSUZ_E01734, LOC104446416

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 238aa MW: 26916.8 Da PI: 9.2301

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01734.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54.1	2e-17	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+ tf kR+ng++KK +ELS+LC+++++ i++ss Eucgr.E01734.1.p 11 IANDAARKATFKKRKNGLMKKVSELSTLCGIDACAIVYSSY 51 899************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.1	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.4E-24	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.98E-24	1	85	IPR002100	Transcription factor, MADS-box
CDD	cd00266	5.68E-30	2	85	No hit	No description
PRINTS	PR00404	1.0E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.5E-18	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043078	Cellular Component	polar nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MTRKKVTLAY IANDAARKAT FKKRKNGLMK KVSELSTLCG IDACAIVYSS YQAEPEVWPS 60 TLGVHRAIAR FKNMSEMDQS KRMVNQQEFI RQRIVKAEEQ LKKQLHENRE REIVQVMYRA 120 LVGEGLQGLI IVDLNDLGWM LDKTGKEIEE RIKKLKKSTP SSEQAASAEL QADKAAPENH 180 AALNDVVAVE ATQNQPWYMD LLKPRNEGDA LNLGRNDPMP SYPYGNPTPS WSDFYFP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVTLAYIANDAARKATFKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00553	DAP	Transfer from AT5G48670	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01734.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010058574.1	1e-178	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	4e-53	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A059C5R3	1e-177	A0A059C5R3_EUCGR; Uncharacterized protein
STRING	XP_010058574.1	1e-178	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	6e-51	AGAMOUS-like 80

Link Out ? help Back to Top
Phytozome	Eucgr.E01734.1.p
Entrez Gene	104446416

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]