PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01753.1.p

Common Name

EUGRSUZ_E01753

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 212aa MW: 23342.2 Da PI: 5.6473

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01753.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.4	6.1e-14	97	187	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefe 91 f+ +lt+s+v + +l +p + ++ + ++ t t+ + ++W+v l k +r + Wk+Fv++n+Lk+gD +vF+l++ ++ + Eucgr.E01753.1.p 97 FDVILTKSHVQPRYNLFIPSRMH---SLLPSQD-TQTVLAYKDKTWNVML--YTKTKR--FDYSWKQFVDDNHLKAGDACVFELMEClsTKVT 181 77899************9975...3333333.66788899****..444445..5778*****************8853235555 PP .EEEEE CS B3 92 lvvkvf 97 ++v+++ Eucgr.E01753.1.p 182 FKVQIL 187 566665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.4E-18	93	189	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-16	93	181	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.61E-18	95	188	No hit	No description
SMART	SM01019	0.0029	97	190	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.3E-12	97	187	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.111	97	190	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
QHASSLHVPS STLRSPRSAR RCSSSSSDSD GDPPRIPETE AEDEAEDEAP LAPRSSSPST 60 ARTPVLDPAG VLSLPLRGNM SGGQEDDYWP LSGKPFFDVI LTKSHVQPRY NLFIPSRMHS 120 LLPSQDTQTV LAYKDKTWNV MLYTKTKRFD YSWKQFVDDN HLKAGDACVF ELMECLSTKV 180 TFKVQILRSD FPAELLGKIS GETAGAPIVI E*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01753.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056520.1	2e-96	PREDICTED: B3 domain-containing protein Os04g0386900
TrEMBL	A0A059C4K6	1e-154	A0A059C4K6_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010056520.1	9e-96	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18654	5	6

Link Out ? help Back to Top
Phytozome	Eucgr.E01753.1.p