PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01933.1.p
Common NameEUGRSUZ_E01933
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 160aa    MW: 17687.5 Da    PI: 10.4796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01933.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.34.8e-1241149299
                       EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHH.HHHHHT--TT-EE CS
                B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWke.FvkangLkegDfv 80 
                       +k+lt+sd + + +rl+lp + +e+h           + k+ ++++++++d +   + ++ ++ + +s++yvl+ GW + Fvk  gL++gD +
  Eucgr.E01933.1.p  41 KKKLTKSDLSDHlSRLILPGRLVEAHvlplmgeamagQVKSGGGMKVVMRDADTrDEHKLVFCRWLSSRSYVLKCGWTNlFVKRRGLEVGDEI 133
                       58999999988889*****************9999976666799*******7664789999999*************977************* PP

                       EEEE-SS.SEE..EEEEE-S CS
                B3  81 vFkldgr.sefelvvkvfrk 99 
                        ++  ++ s+f  +++v+rk
  Eucgr.E01933.1.p 134 GIY--WDkSKF--HFTVHRK 149
                       ***..554888..7777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1634152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1537148IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-540150IPR003340B3 DNA binding domain
PfamPF023621.9E-842147IPR003340B3 DNA binding domain
CDDcd100171.82E-1347147No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEESSSAQSR LIHFIPFLLS SLGSSSSPPI QNASTDKCKI KKKLTKSDLS DHLSRLILPG  60
RLVEAHVLPL MGEAMAGQVK SGGGMKVVMR DADTRDEHKL VFCRWLSSRS YVLKCGWTNL  120
FVKRRGLEVG DEIGIYWDKS KFHFTVHRKV GRGTSNAVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01933.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728845.11e-65PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C4T51e-113A0A059C4T5_EUCGR; Uncharacterized protein
STRINGXP_010058652.11e-87(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.17e-20B3 family protein