PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01943.1.p
Common NameEUGRSUZ_E01943, LOC104446514
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 168aa    MW: 18878.5 Da    PI: 7.9069
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01943.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-1040157399
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS..........-EEEEEE..EEETTEEEE-TTHHH.HHHHHT CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg..........rsWevkliyrkksgryvltkGWke.Fvkang 73 
                       k+lt+sd   ++rl lp ++++ h           g  ++e++++ +  e+           ++ +  ++y+ +sg yvl +GW+e Fv+  +
  Eucgr.E01943.1.p  40 KKLTKSDLDHLSRLLLPPDCVRIHvlrwmkkemvgGVHSKEGMEVNVIKERTegtegtegkdQEHRHVFRYWASSGCYVLNGGWSElFVNGGD 132
                       99*******************999****99999974445588899998887788999***88444444455*************9989***** PP

                       --TT-EEEEEE-SSSEE..EEEEE-S CS
                B3  74 LkegDfvvFkldgrsefelvvkvfrk 99 
                       L++gD +  + + + + ++++kv+rk
  Eucgr.E01943.1.p 133 LNVGDEIGMYWNTN-SCKFHFKVLRK 157
                       **********6655.44469999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1234161IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-1236156No hitNo description
Gene3DG3DSA:2.40.330.101.6E-1438164IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKTPQWSASD VTRFVCAEGK ISSDVSTELA LYDDPWKIRK KLTKSDLDHL SRLLLPPDCV  60
RIHVLRWMKK EMVGGVHSKE GMEVNVIKER TEGTEGTEGK DQEHRHVFRY WASSGCYVLN  120
GGWSELFVNG GDLNVGDEIG MYWNTNSCKF HFKVLRKVAC GTSNPAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01943.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058658.11e-123PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A059C5G91e-122A0A059C5G9_EUCGR; Uncharacterized protein
STRINGXP_010058658.11e-123(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.16e-22B3 family protein