PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01948.1.p
Common NameEUGRSUZ_E01948
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 188aa    MW: 21765.9 Da    PI: 10.7561
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01948.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.11e-1067159280
                       EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHH.HHHHHT--TT-EE CS
                B3   2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWke.FvkangLkegDfv 80 
                       +k+lt+sd +++ +rl+lp+  +e+h           + +++ ++++++++ +  r+ ++ ++ ++++g+yvl +GW + Fvk+ +L++g  +
  Eucgr.E01948.1.p  67 KKKLTKSDLSAHlSRLMLPRGSVEAHvfrlmdnemkkQVESKDGMKVVVRNADTrREHKLVFRRWGSPGTYVLNGGWHKlFVKERELEVGHEI 159
                       6899999999999*****************9998776444447899999996555999999999*************766********99654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.5E-762146IPR005508B3 domain-containing protein
SMARTSM010194.8E-666178IPR003340B3 DNA binding domain
CDDcd100171.65E-1466176No hitNo description
SuperFamilySSF1019361.49E-1566176IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-1567178IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTSRKIAHGR NRREREKGSI EVKRKGSSSS VVPYNNSRPV PRHEEEENIY AGFSTDLVLY  60
EDQCKIKKKL TKSDLSAHLS RLMLPRGSVE AHVFRLMDNE MKKQVESKDG MKVVVRNADT  120
RREHKLVFRR WGSPGTYVLN GGWHKLFVKE RELEVGHEIG MFWDKYERKF FITVHRRVAR  180
GPSNAAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01948.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058662.11e-121PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5501e-135A0A059C550_EUCGR; Uncharacterized protein
STRINGXP_010058662.11e-120(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.11e-21B3 family protein