PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01986.1.p

Common Name

EUGRSUZ_E01986

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 116aa MW: 13394.3 Da PI: 8.7807

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01986.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59.6	1e-18	13	96	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA GF vrksk++k+ ++geit+r fvC++ g++ +++++ +++ +++e r+gC a +k k e +g+ ev + ++eHn e+ Eucgr.E01986.1.p 13 YVSYAIGKGFGVRKSKTRKN-DKGEITRRIFVCNCAGYSVNSSDQ--EKKYEKPEVRCGCPALIKFKVE-NGVHEVVEYVSEHNYEFI 96 99************9998.8888**********999877..9999*************9.************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-16	13	96	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MVFASELEAY YKYVSYAIGK GFGVRKSKTR KNDKGEITRR IFVCNCAGYS VNSSDQEKKY 60 EKPEVRCGCP ALIKFKVENG VHEVVEYVSE HNYEFIPEHQ RHLIRCERMI SNTCK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01986.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056981.1	2e-54	PREDICTED: protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A059C570	5e-79	A0A059C570_EUCGR; Uncharacterized protein
STRING	XP_010027018.1	1e-54	(Eucalyptus grandis)
STRING	XP_010056981.1	8e-54	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM27589	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	8e-12	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E01986.1.p