PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02013.1.p
Common NameEUGRSUZ_E02013
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 173aa    MW: 19984.9 Da    PI: 9.2459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.72.7e-1059163294
                       EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.........-EEEEEE....EEETTEEEE-TTH.HHHHHHHT--TT-E CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.........rsWevkliy..rkksgryvltkGW.keFvkangLkegDf 79 
                       +k+lt+sd + ++rl + +  +++h   g++  e+++ ++++ +g          +We +l +  + +sg+yvl+++W keFv+  gL ++D 
  Eucgr.E02013.1.p  59 KKKLTKSDLGHQSRLLILRARMTTHvlpGMS--EEMETQVMSGEGanvvvwdadTRWEHQLVFsfWASSGAYVLKRCWiKEFVQRRGLAARDE 149
                       699**********************998666..56788899999999*99999999999996677*************899***********9 PP

                       EEEEE-SS.SEE..EE CS
                B3  80 vvFkldgr.sefelvv 94 
                       + ++   + ++ ++++
  Eucgr.E02013.1.p 150 IGIYW--DpTTNRFHF 163
                       98884..434444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-1057168IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-1158167No hitNo description
Gene3DG3DSA:2.40.330.101.8E-1259170IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVSWAPRNAV TLVKKSLLPN RSENSWPRSL TVREREEEEE RCNGISTELV LLFDPYKIKK  60
KLTKSDLGHQ SRLLILRARM TTHVLPGMSE EMETQVMSGE GANVVVWDAD TRWEHQLVFS  120
FWASSGAYVL KRCWIKEFVQ RRGLAARDEI GIYWDPTTNR FHFSLLCKAN QT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02013.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058709.25e-90PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A059C5R91e-125A0A059C5R9_EUCGR; Uncharacterized protein
STRINGXP_010058709.11e-100(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-22B3 family protein