PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02016.1.p
Common NameEUGRSUZ_E02016, LOC104444673
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 172aa    MW: 18645.1 Da    PI: 8.5019
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260145.41.6e-45151141100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++
  Eucgr.E02016.1.p  15 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLQSQ 107
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Eucgr.E02016.1.p 108 LAQARAE 114
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.71914115IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4515112IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKESGGSRKQ GTPSPCAACK LLRRRCAQDC VFAPYFPADE PHKFANVHKV FGASNVNKML  60
QDLPVHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDMLQSQLAQ ARAEVVHLRV  120
WQNATMSNHG PSPTSPSNSG SPSSRLMASH GKSIFDMDMM VDQPNLGDSV W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-49111167112LOB family transfactor Ramosa2.1
5ly0_B3e-49111167112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02016.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056710.11e-126PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE94e-73LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A059C4X81e-125A0A059C4X8_EUCGR; Uncharacterized protein
STRINGXP_010056710.11e-126(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.12e-72LOB domain-containing protein 4