PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02045.1.p
Common NameEUGRSUZ_E02045
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 190aa    MW: 21451.7 Da    PI: 9.8439
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.4e-1178184296
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++r+ + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg yvl++GW keFvk  gL +gD v 
  Eucgr.E02045.1.p  78 KKRLTQSDLSHLSRFLIGRDFVKSHflrwmseemvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSGCYVLKGGWiKEFVKRRGLAVGDEVG 170
                       5889***********************999988887555558889999997766778888888*************999***********999 PP

                       EEE-SS.SEE..EEEE CS
                B3  82 Fkldgr.sefelvvkv 96 
                        +   + s  ++++++
  Eucgr.E02045.1.p 171 MYW--EpSASKFHFSL 184
                       994..44444446665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-1576185IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.007977188IPR003340B3 DNA binding domain
CDDcd100173.98E-1777185No hitNo description
Gene3DG3DSA:2.40.330.101.3E-1478185IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-879182IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MATKGPENTK EVGDPHQEIV PAQPKRKSMV SLTNAEAFIA EKKAKSKRTQ KGKKEASGCD  60
PEEVSTELTL LFDPYKIKKR LTQSDLSHLS RFLIGRDFVK SHFLRWMSEE MVRQVESGKG  120
ADVIVRDMDT CSEHRLVFVF WASSGCYVLK GGWIKEFVKR RGLAVGDEVG MYWEPSASKF  180
HFSLLHKAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02045.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058722.21e-115PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A059C4Z41e-138A0A059C4Z4_EUCGR; Uncharacterized protein
STRINGXP_010058720.11e-132(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.15e-29B3 family protein