PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02047.1.p

Common Name

EUGRSUZ_E02047

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 162aa MW: 18174.8 Da PI: 7.5594

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02047.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.2	1.1e-11	50	157	2	97
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 +k lt+sd + ++rl + ++ +++h + ++ e+ +++++d++ + ++ + ++ +sg+yvl++GW keFvk gL +gD v Eucgr.E02047.1.p 50 KKRLTQSDLGHLSRLLIGRDLVKSHflrwmseetvrQVESGEGADVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVG 142 5889***********************9888887555568999*9887777788888*********999**********99 PP EEE-SS.SEE..EEEEE CS B3 82 Fkldgr.sefelvvkvf 97 ++ + s e++++++ Eucgr.E02047.1.p 143 IYW--EpSASEFHFSLL 157 995..445555577665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.29E-14	48	157	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.33E-16	49	157	No hit	No description
Gene3D	G3DSA:2.40.330.10	7.0E-15	50	157	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.4E-8	51	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MASLTDAETL IVEKKAKCQR TQKGKKEASG CDAEEVSTEL ALLFDPYKIK KRLTQSDLGH 60 LSRLLIGRDL VKSHFLRWMS EETVRQVESG EGADVIVRDL DTCSEHRLVF VFWASSGSYV 120 LKGGWIKEFV KRRGLAAGDE VGIYWEPSAS EFHFSLLHRA N*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02047.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010058722.2	1e-115	PREDICTED: B3 domain-containing protein At2g33720
TrEMBL	A0A059C6H8	1e-114	A0A059C6H8_EUCGR; Uncharacterized protein
STRING	XP_010058722.1	1e-114	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	3e-28	B3 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E02047.1.p