PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02048.1.p
Common NameEUGRSUZ_E02048
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 227aa    MW: 25355 Da    PI: 9.4686
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02048.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.64e-12115224299
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg++vl++GW keFvk  gL +gD v 
  Eucgr.E02048.1.p 115 KKRLTQSDLGHLSRLLIRRDFVKSHflrwmneetvrQVESGKGADVIVRDMDTcSEHRLVFVFWASSGSHVLKGGWiKEFVKRRGLAAGDEVG 207
                       5889************************98888777545558889999997766778888888*************999************** PP

                       EEE-SS.SEE..EEEEE-S CS
                B3  82 Fkldgr.sefelvvkvfrk 99 
                       ++ d   s+f  +++v+rk
  Eucgr.E02048.1.p 208 IYWDAIaSKF--HFSVLRK 224
                       9977655666..8888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-15113224IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0012114225IPR003340B3 DNA binding domain
CDDcd100177.24E-18114223No hitNo description
Gene3DG3DSA:2.40.330.106.4E-16115224IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-8116223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDSSSCSCLY YLHNQEKNGD EGVRGISSAS VVVDREFFPL APDQNTKEVG GPRQEVVPAQ  60
PKRKSMASLT NAESLIAEKK AKCKRTQKGK KEASGCGAEE VCTELTLLFD PYKIKKRLTQ  120
SDLGHLSRLL IRRDFVKSHF LRWMNEETVR QVESGKGADV IVRDMDTCSE HRLVFVFWAS  180
SGSHVLKGGW IKEFVKRRGL AAGDEVGIYW DAIASKFHFS VLRKAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02048.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728844.11e-168PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5T81e-167A0A059C5T8_EUCGR; Uncharacterized protein
STRINGXP_010058723.11e-161(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-29B3 family protein