PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02054.1.p
Common NameEUGRSUZ_E02054
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 114aa    MW: 12973.8 Da    PI: 7.1836
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02054.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.73.1e-11297284
                      EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEE CS
                B3  2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFk 83
                      +k lt+sd + ++rl +  + +++h           + ++ ++ +++++d  ++ + ++ + ++ +sg+yvl++GW keFvk  gL +gD v ++
  Eucgr.E02054.1.p  2 EKRLTHSDLGHLSRLLIGQDLVKSHflrwmseetvrQVESGQGADVIVRDmDTSSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLATGDEVGIY 96
                      6899************************99888887555568999999995556888888888*************999***********88777 PP

                      E CS
                B3 84 l 84
                       
  Eucgr.E02054.1.p 97 W 97
                      4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023622.6E-8296IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-142107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-132106IPR015300DNA-binding pseudobarrel domain
CDDcd100176.91E-143109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MEKRLTHSDL GHLSRLLIGQ DLVKSHFLRW MSEETVRQVE SGQGADVIVR DMDTSSEHRL  60
VFVFWASSGS YVLKGGWIKE FVKRRGLATG DEVGIYWEPI ASEFHFSLLH RAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02054.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058722.25e-72PREDICTED: B3 domain-containing protein At2g33720
TrEMBLA0A059C5U33e-76A0A059C5U3_EUCGR; Uncharacterized protein
STRINGXP_010058722.18e-71(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-23B3 family protein