PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02056.1.p

Common Name

EUGRSUZ_E02056

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 71aa MW: 7648.8 Da PI: 8.2286

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02056.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	54.1	4.6e-17	15	62	1	48
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllka 48 +C Ck+ +r+Ca+dCv+ap pa++p+kfanvh++FGasnv k+ + Eucgr.E02056.1.p 15 PCTLCKLPQRRCAQDCVFAPNCPADEPHKFANVHEVFGASNVNKMFQV 62 7********************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.613	14	70	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-16	15	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 71 aa Download sequence Send to blast
MKESGGGWKQ GMPSPCTLCK LPQRRCAQDC VFAPNCPADE PHKFANVHEV FGASNVNKMF 60 QVTHLISSSV *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-14	11	60	7	56	LOB family transfactor Ramosa2.1
5ly0_B	2e-14	11	60	7	56	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02056.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010058727.1	8e-40	PREDICTED: B3 domain-containing protein At2g33720
Swissprot	Q9SHE9	6e-24	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A059C5B2	1e-45	A0A059C5B2_EUCGR; Uncharacterized protein
STRING	XP_010058727.1	3e-39	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12282	14	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	3e-26	LOB domain-containing protein 4

Link Out ? help Back to Top
Phytozome	Eucgr.E02056.1.p