PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02057.1.p
Common NameEUGRSUZ_E02057
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 258aa    MW: 28766.7 Da    PI: 8.9858
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.8e-11146255299
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg yvl++GW keFvk  gL +gD v 
  Eucgr.E02057.1.p 146 KKRLTQSDLGHLSRLLIRREFVKSHflrwmneetvrQVESGKGADVIVTDMDTcSEHRLVFVFWASSGCYVLKGGWiKEFVKRRGLVAGDEVG 238
                       5889************************98887777444557888999996666777888888*************999*************9 PP

                       EEE-SSSEE..EEEEE-S CS
                B3  82 Fkldgrsefelvvkvfrk 99 
                       ++ d     +++++v+rk
  Eucgr.E02057.1.p 239 IYWDP-FASKFHFSVLRK 255
                       99553.444448888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-15144255IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0015145256IPR003340B3 DNA binding domain
CDDcd100171.38E-18145254No hitNo description
Gene3DG3DSA:2.40.330.102.2E-15146255IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-7147254IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGSSSSRVSH LQDHEQKPVG DHLRSEVHSP PPSMDSSSCL SSLHDQEKDR DEGARGTSFA  60
GVVVSREFFS VAPNRTTKEV GGPSQEIVPA QLKRKSVALP TDAETLIVEK KAKCKRTQKG  120
KKEASGCDAE EVSTELTLLF DPYKIKKRLT QSDLGHLSRL LIRREFVKSH FLRWMNEETV  180
RQVESGKGAD VIVTDMDTCS EHRLVFVFWA SSGCYVLKGG WIKEFVKRRG LVAGDEVGIY  240
WDPFASKFHF SVLRKAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042934.11e-167PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5000.0A0A059C500_EUCGR; Uncharacterized protein
STRINGXP_010058722.11e-169(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-29B3 family protein