PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02078.1.p
Common NameEUGRSUZ_E02078
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 149aa    MW: 16873.6 Da    PI: 9.5978
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02078.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.6e-1337142396
                       EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEE CS
                B3   3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvF 82 
                       k+lt sd + ++rl lp  ++++h           + k+ee++ ++ +d  +gr+ ++ ++ +k+ g+yvl +GW keFv++++Lk+gD +  
  Eucgr.E02078.1.p  37 KKLTGSDLSPLSRLLLPAGCLQTHvfpqmdkkmlrQVKSEEGMPVVGKDvATGRKHQFVFRCWKSTGSYVLNGGWtKEFVEEKRLKVGDEIEM 129
                       89999********************9977766666555556666777776667998888888*************668***********7655 PP

                       EE-SS.SEE..EEEE CS
                B3  83 kldgr.sefelvvkv 96 
                          +  s++ +++kv
  Eucgr.E02078.1.p 130 V--WVmSSRMFHFKV 142
                       5..444555556665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.2E-1732143IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1735142IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-937141IPR003340B3 DNA binding domain
CDDcd100172.87E-1189143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKTPESSTSD VAHFVCAERV DVSTDLALYE DPWKIRKKLT GSDLSPLSRL LLPAGCLQTH  60
VFPQMDKKML RQVKSEEGMP VVGKDVATGR KHQFVFRCWK STGSYVLNGG WTKEFVEEKR  120
LKVGDEIEMV WVMSSRMFHF KVLHRAAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02078.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058732.12e-82PREDICTED: gibberellin 2-beta-dioxygenase 8
RefseqXP_010058733.11e-82PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5131e-106A0A059C513_EUCGR; Uncharacterized protein
STRINGXP_010058732.19e-82(Eucalyptus grandis)
STRINGXP_010058733.15e-82(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.18e-16B3 family protein