PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02410.1.p

Common Name

EUGRSUZ_E02410

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

LBD

Protein Properties

Length: 117aa MW: 12430.3 Da PI: 7.0817

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02410.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.8	1.3e-36	38	117	1	80
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +CaaCk+lrr+C+++Cvlapyfp ++p+kfa++h++FGasn++k+l +lpe++r+da++s++yeA r+rdPvyG++g i Eucgr.E02410.1.p 38 PCAACKTLRRRCSESCVLAPYFPPSEPAKFAIAHRVFGASNIVKFLLTLPESQRDDAVTSMIYEASTRIRDPVYGCAGAI 117 7****************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.292	37	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-36	38	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MESSDTGAFE SSPPSSLVPP SWSSPTPALP LPVVVASPCA ACKTLRRRCS ESCVLAPYFP 60 PSEPAKFAIA HRVFGASNIV KFLLTLPESQ RDDAVTSMIY EASTRIRDPV YGCAGAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-35	36	117	9	90	LOB family transfactor Ramosa2.1
5ly0_B	3e-35	36	117	9	90	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02410.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056894.1	8e-80	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9LQR0	2e-47	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A059C5R1	1e-77	A0A059C5R1_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010056894.1	3e-79	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-43	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	Eucgr.E02410.1.p