PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02489.1.p

Common Name

EUGRSUZ_E02489

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 250aa MW: 28409.8 Da PI: 10.0854

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02489.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71	1.1e-22	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqv +skRrng+lKKA+ELSvL +aeva+i + ++gklye+ss Eucgr.E02489.1.p 9 KRIENNTSRQVRLSKRRNGLLKKAFELSVLYNAEVALISVFPRGKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	26.044	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.3E-28	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-23	3	23	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.01E-21	3	61	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.4E-19	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-23	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-23	38	59	IPR002100	Transcription factor, MADS-box
Gene3D	G3DSA:3.60.10.10	2.0E-27	135	242	IPR005135	Endonuclease/exonuclease/phosphatase
SuperFamily	SSF56219	5.92E-17	139	236	IPR005135	Endonuclease/exonuclease/phosphatase
Pfam	PF03372	2.7E-7	145	235	IPR005135	Endonuclease/exonuclease/phosphatase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MVRGKTQMKR IENNTSRQVR LSKRRNGLLK KAFELSVLYN AEVALISVFP RGKLYEFSSS 60 TRRGSLFFPK PSLKKISKIF RTESRRRLKA CNCPTDLERK NSKDICFRCQ QPSIGEDDIS 120 SEEEDDGTNG FEMVDISTAA VGNQMKYGLV AIKQMVGIFV TVWIRRELIQ HVSHLRISCT 180 SRGIMGCLGN KGCISVSMLF HQKSFCFICS HLAYGEKEGD ELRRNSDVVE ILKNTQFAKI 240 CSRSETNWN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02489.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF086642	5e-72	AF086642.1 Eucalyptus globulus subsp. globulus putative MADS box transcription factor ETL mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010031345.1	1e-124	PREDICTED: type I inositol polyphosphate 5-phosphatase 10 isoform X1
Refseq	XP_010031346.1	1e-124	PREDICTED: type I inositol polyphosphate 5-phosphatase 10 isoform X1
Refseq	XP_010031347.1	1e-125	PREDICTED: type I inositol polyphosphate 5-phosphatase 10 isoform X2
Swissprot	A8MR21	3e-66	IP5PA_ARATH; Type I inositol polyphosphate 5-phosphatase 10
TrEMBL	A0A059C6U2	0.0	A0A059C6U2_EUCGR; Uncharacterized protein
STRING	XP_010031345.1	1e-123	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11880.1	1e-26	AGAMOUS-like 14

Link Out ? help Back to Top
Phytozome	Eucgr.E02489.1.p

Publications ? help Back to Top
Berdy SE,Kudla J,Gruissem W,Gillaspy GE Molecular characterization of At5PTase1, an inositol phosphatase capable of terminating inositol trisphosphate signaling. Plant Physiol., 2001. 126(2): p. 801-10 [PMID:11402208]