PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02798.1.p
Common NameEUGRSUZ_E02798
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 246aa    MW: 27127.5 Da    PI: 8.4984
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02798.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.6e-1977131256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++ eq  +Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  Eucgr.E02798.1.p  77 RKKLRLSGEQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARSK 131
                       6788899**********************************************98 PP
2HD-ZIP_I/II122.71.8e-3977166191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rls eq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR k+kq+ +d+e+Lkr++d+l++en+rL+kev+eLr +l
  Eucgr.E02798.1.p  77 RKKLRLSGEQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARSKMKQTKVDCEYLKRCCDNLTQENKRLQKEVQELR-AL 166
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046185.7E-12247IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.7E-1960133IPR009057Homeodomain-like
SuperFamilySSF466894.6E-1964134IPR009057Homeodomain-like
PROSITE profilePS5007117.42773133IPR001356Homeobox domain
SMARTSM003898.6E-1775137IPR001356Homeobox domain
CDDcd000864.44E-1677131No hitNo description
PfamPF000461.6E-1677131IPR001356Homeobox domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PfamPF021831.1E-9133167IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.0E-24133176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
TNSKTRPFFG GVGVNRDILV VDLDDDNHVS SPNSTVSSIS GKRSERDPHG ENEVEAERTS  60
CSCESIEEDG SGGDGARKKL RLSGEQSLVL EETFKEHNTL NPKQKLALAK QLNLSPRQVE  120
VWFQNRRARS KMKQTKVDCE YLKRCCDNLT QENKRLQKEV QELRALKLSP QLYMHMNPPT  180
TLTMCPSCQR VSVPSASLSP PSSSSVTASV IGPIGPVHNP FSQSGPSINS WARLQMQQGL  240
NNLHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARSKMKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02798.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057133.10.0PREDICTED: homeobox-leucine zipper protein ATHB-4
SwissprotP466026e-86HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A059C7J00.0A0A059C7J0_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010057133.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25772772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.15e-59homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]