PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02813.1.p
Common NameEUGRSUZ_E02813, LOC104445047
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 423aa    MW: 47554.7 Da    PI: 4.8541
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02813.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.7e-34141052102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+ye+++ ++++ ++sws+ ++sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll
  Eucgr.E02813.1.p  14 FLVKTYEMVDAASTDPVVSWSQGSKSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFVRGQPQLL 97 
                       9****************************************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  Eucgr.E02813.1.p  98 KNIHRRKP 105
                       *****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.3E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.1E-6110103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.2E-3710103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-181437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-185264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDESPSGSNS LPPFLVKTYE MVDAASTDPV VSWSQGSKSF VVWNPPEFAR DLLPKYFKHN  60
NFSSFIRQLN TYGFRKIDPE RWEFANDDFV RGQPQLLKNI HRRKPVHSHS LQNLQNQGSS  120
SPLTDAERQG LKEEVERLKG DKESLQLELQ VHEEERKGFE VQMQNLKARL LKMEERQKNM  180
VSNLGNVLQK PGLALNMLIE SEFNDKKRRL PRIGYYHDEG HGEDNHAGTP QTLTRENIDG  240
ASSLPSILDL YEQLESSLTI WEYIAHDCEN IGQRNSTLDF DETTSCADSP AISCIQFNID  300
ARPRSPTIDM NSEPTAATVF EPAVVTTSEP ALTVASEPVS SKEQAVATAP NVPAGVNDVF  360
WEQFLTENPG SSDVQEVQSE RKDTDGRRNE SKPADHSRFW WNAKTVNNLT GQLGHLTPAE  420
ST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-24610312120Heat shock factor protein 1
5d5u_B3e-24610321129Heat shock factor protein 1
5d5v_B3e-24610321129Heat shock factor protein 1
5d5v_D3e-24610321129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02813.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057144.10.0PREDICTED: heat stress transcription factor A-4c
SwissprotO494031e-127HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A059C7E80.0A0A059C7E8_EUCGR; Uncharacterized protein
STRINGXP_010057144.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-121heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]