PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02863.1.p
Common NameEUGRSUZ_E02863
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26237.8 Da    PI: 9.6367
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02863.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.27.1e-312574150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyey+
  Eucgr.E02863.1.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYA 74
                      79***********************************************8 PP
2K-box103.52.7e-34911892100
             K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                       ++ss+ s++ea+ + +qqe+akL+++i+n+q+++R+l+G+++  +++k+++  eq+Lek++ kiR+kKnell+++ie++qk+e +l+++n+ L
  Eucgr.E02863.1.p  91 DSSSSGSVSEANVQFYQQESAKLQQQINNMQNNNRQLVGDSIAGMNMKDMKTTEQKLEKAIAKIRAKKNELLFAEIEYMQKREIDLHNNNQVL 183
                       55666779************************************************************************************* PP

             K-box  95 rkklee 100
                       r+k++e
  Eucgr.E02863.1.p 184 RAKIAE 189
                       ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.9E-421776IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.6691777IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.18E-321890IPR002100Transcription factor, MADS-box
CDDcd002653.59E-441887No hitNo description
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-321939IPR002100Transcription factor, MADS-box
PfamPF003195.8E-262673IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-323954IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-325475IPR002100Transcription factor, MADS-box
PfamPF014861.1E-23101187IPR002487Transcription factor, K-box
PROSITE profilePS5129713.409103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MVFPTQATPE ESPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCEAEVA  60
LIVFSSRGRL YEYANDSVKA TIERYKKACS DSSSSGSVSE ANVQFYQQES AKLQQQINNM  120
QNNNRQLVGD SIAGMNMKDM KTTEQKLEKA IAKIRAKKNE LLFAEIEYMQ KREIDLHNNN  180
QVLRAKIAES ERTQHADMNL MPGGTNYDFM QPSSSQPFDS RNYFQVNVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-201785169Myocyte-specific enhancer factor 2B
1tqe_Q2e-201785169Myocyte-specific enhancer factor 2B
1tqe_R2e-201785169Myocyte-specific enhancer factor 2B
1tqe_S2e-201785169Myocyte-specific enhancer factor 2B
5f28_A3e-201785169MEF2C
5f28_B3e-201785169MEF2C
5f28_C3e-201785169MEF2C
5f28_D3e-201785169MEF2C
6c9l_A2e-201785169Myocyte-specific enhancer factor 2B
6c9l_B2e-201785169Myocyte-specific enhancer factor 2B
6c9l_C2e-201785169Myocyte-specific enhancer factor 2B
6c9l_D2e-201785169Myocyte-specific enhancer factor 2B
6c9l_E2e-201785169Myocyte-specific enhancer factor 2B
6c9l_F2e-201785169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02863.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4657300.0AB465730.1 Eucalyptus grandis AGL mRNA for agamous-like protein, complete cds, clone: EgAGL2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057185.11e-171PREDICTED: glycogen debranching enzyme isoform X2
RefseqXP_010057186.11e-171PREDICTED: glycogen debranching enzyme isoform X2
SwissprotQ408851e-124AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A059C6W41e-170A0A059C6W4_EUCGR; Uncharacterized protein
STRINGXP_010057183.11e-148(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61812237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-102MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]