PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02870.1.p
Common NameEUGRSUZ_E02870
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 184aa    MW: 21055.8 Da    PI: 9.5219
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02870.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.76.1e-181563149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      krien+ +r +tfskRr gi K A+EL +LC aev v+++s++g+ + +
  Eucgr.E02870.1.p 15 KRIENEDRRLITFSKRRSGIYKIASELVTLCRAEVGVVVLSPSGNPFSF 63
                      79*****************************************986666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.6E-20766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.88767IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-16929IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-221082IPR002100Transcription factor, MADS-box
PfamPF003194.6E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-162944IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-164465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MAGKQTREHQ RIEMKRIENE DRRLITFSKR RSGIYKIASE LVTLCRAEVG VVVLSPSGNP  60
FSFAHPSIDT VANQFLNRNP PSIDGSYALV ESNRQARINE LNQQYDELIN QIKVEEARNK  120
VLKQLTEGKG NDAWWEAPIE ELNLEELNQM KVRMEDLRRS LWMSINQRTR GKASKSIQGQ  180
SSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02870.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059071.11e-132PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A059C7981e-132A0A059C798_EUCGR; Uncharacterized protein
STRINGXP_010059071.11e-131(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-38AGAMOUS-like 62