PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02872.1.p
Common NameEUGRSUZ_E02872
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 166aa    MW: 19240.8 Da    PI: 9.8173
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02872.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.5e-181564150
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                      k++en+  + +tfskRr gi KKA+EL +LC+ ev v ifs++gk y ++
  Eucgr.E02872.1.p 15 KQVENEEDKLITFSKRRSGIYKKASELVTLCGSEVGVAIFSPSGKPYSFA 64
                      6789*****************************************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.114767IPR002100Transcription factor, MADS-box
SMARTSM004323.8E-24766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-24983IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-18929IPR002100Transcription factor, MADS-box
PfamPF003197.2E-211763IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-182944IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-184465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAGRRTPRRR RVEMKQVENE EDKLITFSKR RSGIYKKASE LVTLCGSEVG VAIFSPSGKP  60
YSFAHPSIDS IATRFRNRNH PQNVGANNLV ESYRRLRIDE LNQQHDELVD QINDDKARGK  120
TLKQMTEERD GEGWWEAPIE ELSLEELKQM KARMVELRRN LQGSIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02872.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059075.11e-121PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A058ZUL31e-119A0A058ZUL3_EUCGR; Uncharacterized protein
TrEMBLA0A059C6X31e-120A0A059C6X3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059075.11e-120(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-38AGAMOUS-like 61