PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E03260.1.p

Common Name

EUGRSUZ_E03260, LOC104445258

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

SBP

Protein Properties

Length: 148aa MW: 16977.5 Da PI: 6.3574

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E03260.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.2	8.8e-42	63	138	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C++d+++ak+yhrrhkvCe+h+ka+v++v+gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++ Eucgr.E03260.1.p 63 CQAENCSVDMTDAKRYHRRHKVCEFHAKASVAMVAGLRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKSS 138 **************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	2.2E-56	7	147	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	1.8E-33	59	124	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.206	60	137	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.96E-39	61	141	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-31	63	136	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MESPNFGEDE RSLKDNKMED EDLEEEEEDE DESSEADRKR ARAATRSTRK GGSCSGWAPP 60 PLCQAENCSV DMTDAKRYHR RHKVCEFHAK ASVAMVAGLR QRFCQQCSRF HELSEFDETK 120 RSCRRRLAGH NERRRKSSYD NQGEGSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-37	55	136	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E03260.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ450389	0.0	HQ450389.1 Eucalyptus globulus SPL3-like protein (SPL3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057392.1	1e-105	PREDICTED: squamosa promoter-binding-like protein 3
Swissprot	Q38741	4e-45	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A059C8J5	1e-103	A0A059C8J5_EUCGR; Squamosa promoter-binding-like protein
STRING	XP_010057392.1	1e-104	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	3e-45	squamosa promoter binding protein-like 5

Link Out ? help Back to Top
Phytozome	Eucgr.E03260.1.p
Entrez Gene	104445258

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]