PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E03272.1.p
Common NameEUGRSUZ_E03272
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 183aa    MW: 20563.4 Da    PI: 6.3672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E03272.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-131362555
                      HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                       +  Er+RR++++  f+eL +l+P+ +   p +K ls  + L +A +YI+sLq
  Eucgr.E03272.1.p 13 RKRTERNRRNQMKALFSELHSLVPQqS---PTEKtLSLPDQLGEAANYIRSLQ 62
                      5678*********************55...88888*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.455861IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-131078IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-121375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-91462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00211467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-71766No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MMESKPGSSR PDRKRTERNR RNQMKALFSE LHSLVPQQSP TEKTLSLPDQ LGEAANYIRS  60
LQVKVEKMRE QKEQLLEVGK INTTMNSGPM IGFKSPEIRI WNNKSILEVV LVTGLDGQFM  120
FNETVQVIHE EGADIVNASS SYVGDAMLHT IHAKVGEGDS SEERISERLQ KIVNDMLMES  180
HP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E03272.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057407.11e-132PREDICTED: uncharacterized protein LOC104445269 isoform X1
SwissprotF4JIJ73e-41BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A059C7W91e-131A0A059C7W9_EUCGR; Uncharacterized protein
STRINGXP_010057407.11e-132(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-43bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]